Genetic Variations

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문서 역사
  1. SNPs
    1. Validated, Unvalidated, and Novel SNPs
    2. Individual Genome comparison
      1. Share and non-share SNPs
      2. Non-synonymous SNPs
    3. Comparison of Genome Sequencing and SNP Array Genotyping Allele
    4. SNP rate of Homo/hetero
    5. Genes of related-Non-synonymous SNPs
  2.  InDel
    1. Total number of indel calls
    2. Rate of indel calls matched by dbSNP
    3. Distribution of indels
    4. Indel rate of Homo/Hetero
    5. Comparision between KSJ indels and Venter, Watson, African, and YH
    6. Indels in coding genes 
  3. Structural Variations
    1. Size distribution for DNA fragment libraries of KSJ sample
    2. Size distribution of deletion in KSJ relative to the reference
      1. SINE, LINE, LTR and DNA transposon insertion
      2. Define break point of structureal variation
    3. Size distribution of insertion in KSJ relative to the reference
    4. Detect of the inversion & complex structural variatioin
    5. Overlap DGV and Transposable Elements
    6. Genes overlapped with CNVs
  4. PCR-amplified results for validated SNPs, Indels, and CNVs

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