- About Dr. Kim as a Korean, Asian - cf. Chinese, Japanese
- Raw Data Statistics
- 1st 8 Runs : 36bp PE
- Solexa Genome Analyzer - Paired End Sequencing
- Number of reads : 638,887,298
- Total bases: 543,920,665 bp
- 2nd Runs : 75bp PE
- Genomics coverage
- Coverage depth: 7.8 X
- Reference genome coverage: 6.66 X
- Comparison nucleotide composition
|
|
A
|
C
|
G
|
T
|
|
Reference
|
29.53%
|
20.44%
|
20.46%
|
29.57%
|
|
KSJ
|
28.13%
|
21.82%
|
21.79%
|
28.26%
|
- Data statistics
|
Nucleotide
|
Total
|
22.4 Giga bases
|
|
Map to genome
|
20.7 Giga bases
|
|
Coverage of genome
|
98.35 %
|
|
Polymorphism
|
SNP
|
3.235 M
|
|
Insertion(1~6bp)
|
183,216
|
|
Deletion(1~16bp)
|
342,591
|
-
- mapping status of each chromosome
-
|
# chro.
|
match_NT
|
Concordance
|
Disconcordance
|
Chro. Leng.
|
Valid Length(-n)
|
|
chr1
|
1500124617
|
1480849009
|
19275608
|
247249719
|
224999719
|
|
chr2
|
1539108524
|
1519527564
|
19580960
|
242951149
|
237709794
|
|
chr3
|
1269257030
|
1252639505
|
16617525
|
199501827
|
194704822
|
|
chr4
|
1174045761
|
1158003964
|
16041797
|
191273063
|
187297063
|
|
chr5
|
1141557060
|
1126242112
|
15314948
|
180857866
|
177702766
|
|
chr6
|
1096777975
|
1081670714
|
15107261
|
170899992
|
167273991
|
|
chr7
|
1018680597
|
1003420431
|
15260166
|
158821424
|
154952424
|
|
chr8
|
957520256
|
943705837
|
13814419
|
146274826
|
142612826
|
|
chr9
|
783729352
|
771287568
|
12441784
|
140273252
|
120143252
|
|
chr10
|
940744908
|
925814873
|
14930035
|
135374737
|
131624728
|
|
chr11
|
918971503
|
905164857
|
13806646
|
134452384
|
131130753
|
|
chr12
|
913050909
|
899235119
|
13815790
|
132349534
|
130303032
|
|
chr13
|
687448760
|
675836652
|
11612108
|
114142980
|
95559980
|
|
chr14
|
676595645
|
664564421
|
12031224
|
106368585
|
88290585
|
|
chr15
|
645813850
|
633955821
|
11858029
|
100338915
|
81341915
|
|
chr16
|
653918428
|
641314492
|
12603936
|
88827254
|
78884752
|
|
chr17
|
626035327
|
614480537
|
11554790
|
78774742
|
77800220
|
|
chr18
|
641036365
|
628314126
|
12722239
|
76117153
|
74656155
|
|
chr19
|
501685104
|
490763964
|
10921140
|
63811651
|
55785651
|
|
chr20
|
556963709
|
545453419
|
11510290
|
62435964
|
59505253
|
|
chr21
|
415152688
|
404148408
|
11004280
|
46944323
|
34170106
|
|
chr22
|
414972407
|
404716465
|
10255942
|
49691432
|
34851311
|
|
chrX
|
569853286
|
558869663
|
10983623
|
154913754
|
151058754
|
|
chrY
|
270312803
|
260440609
|
9872194
|
57772954
|
25652954
|
- depth of NT distribution
|
depth
|
count
|
|
0
|
389827851
|
|
1
|
139541900
|
|
2
|
203824125
|
|
3
|
261362371
|
|
4
|
296795420
|
|
5
|
305456796
|
|
6
|
290147061
|
|
7
|
257840361
|
|
8
|
216774267
|
|
9
|
174137820
|
|
10
|
134669193
|
|
11
|
100970836
|
|
12
|
73933557
|
|
13
|
53264915
|
|
14
|
38060141
|
|
15
|
27203660
|
|
16
|
19592309
|
|
17
|
14340000
|
|
18
|
10726298
|
|
19
|
8226656
|
|
20
|
6497586
|
|
21
|
5262409
|
|
22
|
4370775
|
|
23
|
3698763
|
|
24
|
3188316
|
|
25
|
2787817
|
|
26
|
2460956
|
|
27
|
2188098
|
|
28
|
1963424
|
|
29
|
1770263
|
|
30
|
1606009
|
- Nucleotide distribution of each chromosome
-
|
#. Chro.
|
G
|
A
|
T
|
C
|
Hetero
|
Sum
|
seqLength
|
Ratio
|
|
chr1
|
26869678
|
35266832
|
50151993
|
26788306
|
1.26E+08
|
2.65E+08
|
4.94E+08
|
0.537231
|
|
chr2
|
26836449
|
37192056
|
52918332
|
26708598
|
1.41E+08
|
2.84E+08
|
4.86E+08
|
0.58555
|
|
chr3
|
21679071
|
30895114
|
43675773
|
21572048
|
1.16E+08
|
2.34E+08
|
3.99E+08
|
0.587059
|
|
chr4
|
19096006
|
28783405
|
40146262
|
19000781
|
1.13E+08
|
2.2E+08
|
3.82E+08
|
0.575565
|
|
chr5
|
19185719
|
27499600
|
38937433
|
19088770
|
1.04E+08
|
2.09E+08
|
3.61E+08
|
0.578823
|
|
chr6
|
18228026
|
26126675
|
36901715
|
18123042
|
98969264
|
1.98E+08
|
3.42E+08
|
0.580769
|
|
chr7
|
16801624
|
23237995
|
32868692
|
16718570
|
87479353
|
1.77E+08
|
3.17E+08
|
0.558024
|
|
chr8
|
15647343
|
22017075
|
31228565
|
15577566
|
83687846
|
1.68E+08
|
2.92E+08
|
0.575228
|
|
chr9
|
12502487
|
16754640
|
23966212
|
12437388
|
63341940
|
1.29E+08
|
2.8E+08
|
0.46014
|
|
chr10
|
14909357
|
19835097
|
28428699
|
14816487
|
73413747
|
1.51E+08
|
2.71E+08
|
0.55962
|
|
chr11
|
15299578
|
20304630
|
29036499
|
15177437
|
74515332
|
1.54E+08
|
2.69E+08
|
0.574366
|
|
chr12
|
14641641
|
20289951
|
28711828
|
14552623
|
74019034
|
1.52E+08
|
2.64E+08
|
0.575499
|
|
chr13
|
9719736
|
14521665
|
20494977
|
9645648
|
57667963
|
1.12E+08
|
2.28E+08
|
0.491104
|
|
chr14
|
9760744
|
13399250
|
19120635
|
9657492
|
49739762
|
1.02E+08
|
2.13E+08
|
0.47824
|
|
chr15
|
9163726
|
12138585
|
17388271
|
9098891
|
43074555
|
90864028
|
2.01E+08
|
0.453059
|
|
chr16
|
9463513
|
11314456
|
16444809
|
9336595
|
39838230
|
86397603
|
1.78E+08
|
0.486642
|
|
chr17
|
9694425
|
11364608
|
16447396
|
9652556
|
39067108
|
86226093
|
1.57E+08
|
0.547747
|
|
chr18
|
8049395
|
11491945
|
16413170
|
7968466
|
44173360
|
88096336
|
1.52E+08
|
0.579024
|
|
chr19
|
7230041
|
7708836
|
11036248
|
7148973
|
25093471
|
58217569
|
1.28E+08
|
0.456555
|
|
chr20
|
7572017
|
9182946
|
13539868
|
7489633
|
32228238
|
70012702
|
1.25E+08
|
0.56101
|
|
chr21
|
3718769
|
5112407
|
7263014
|
3696340
|
18747439
|
38537969
|
93854507
|
0.410614
|
|
chr22
|
4612745
|
4939343
|
7231815
|
4584096
|
16176677
|
37544676
|
99338285
|
0.377948
|
|
chrX
|
8503952
|
12068549
|
14993185
|
8442867
|
84161382
|
1.28E+08
|
3.09E+08
|
0.414121
|
|
chrY
|
1217353
|
1720130
|
2246871
|
1194962
|
8867001
|
15246317
|
1.16E+08
|
0.131997
|
|
total
|
3.1E+08
|
4.23E+08
|
6E+08
|
3.08E+08
|
1.61E+09
|
3.26E+09
|
6.16E+09
|
0.528992
|
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