20090225 SNP

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문서 역사

30X

Non-syn Gene : 5339

Non-syn SNP  : 9243

Syn Gene     : 8774

Syn SNP      : 19651

Polyphen

TOTAL symbol : 3890

TOTAL alleles : 7438

TOTAL benign : 5998 (80.6%)

TOTAL possibly damaging : 907 (12.2%)

TOTAL probably damaging : 500 (6.7%)

TOTAL unknown : 33 (0.4%)

SIFT

Total symbol : 4662

Total allels : 8776

Total toterated : 6907 (78.7%)

Total deleterious : 1869 (21.3%)

HGMD

Total alleles : 257

Total symbols : 230

OMIM

Total alleles: 299

Total Omim phenotype : 195

SNPedia

Total alleles : 723

Total phenotypes : 211

Comaprison among HGMD, OMIM, and SNPedia

TOTAL rsID : 1163

ISECT rsID : : 7

TOTAL hgmd : 257

TOTAL omim : 299

TOTAL snpedia : 723

UNION hgmd and omim : 535

ISECT hgmd and omim : 21

UNION hgmd and snpedia: 948

ISECT hgmd and snpedia: 32

UNION omim and snpedia: 952

ISECT omim and snpedia: 70

 

-------24X--------
Polyphen
TOTAL symbol : 3737
TOTAL alleles : 7000
TOTAL benign : 5628 (80.4%)
TOTAL possibly damaging : 862 (12.3%)
TOTAL probably damaging : 478 (6.8%)
TOTAL unknown : 32 (0.5%)

SIFT
Total symbol : 4534
Total allels : 8351
Total toterated : 6536 (78.3%)
Total deleterious : 1815 (21.7%)

HGMD
Total alleles : 240
Total symbols : 214

OMIM
Total alleles: 287
Total phenotypes : 189

SNPedia
TOTAL alleles : 725
TOTAL phenotypes : 208

Comaprison among HGMD, OMIM, and SNPedia
TOTAL rsID : 1136
ISECT rsID : : 8
TOTAL hgmd : 240
TOTAL omim : 287
TOTAL snpedia : 725
UNION hgmd and omim : 506
ISECT hgmd and omim : 21
UNION hgmd and snpedia: 933
ISECT hgmd and snpedia: 32
UNION omim and snpedia: 941
ISECT omim and snpedia: 71