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Gachon-mitochondria

Finding of variations in mitochondrial genome   Identification of Haplogroup Mitochondrial DNA sequence was aligned with the rCRS by ClustalW sof…

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Comparison of Genome Sequencing and SNP Array Genotyping Allele

    Table X.  SNP genotyping validation in the KSJ genome comparing independent genotype calls using affymetrix XXX and illum…

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Gachon-Phlyogeny

 Genetic ancestry The Y chromosomal haplotype data from Y Chromosomal Consortium (YCC) were applied to draw the paternal linage tree.  The m…

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References

Mountain and Cavalli-Sforza, 1996, Multilocus Genotypes, a Tree of individuals, and Human Evolutionary History. Am. J. Hum. Genet. 61, 705-718 Bowcock…

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Total number of indel calls

Most of the indels were novel. we also validated 95% of the PCR-amplified KSJ genome 's frameshift indels.       Total dbSNP dbSNP (%) …

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Criteria 2(PCR-experimental data)

- From -16   to +7 - At least 4 reads - Maximum 15 reads - homo: contain indel reads / total reads >= 0.9 - Hetero: contain indel reads / tota…

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Criteria 1 (Indel statistics)

- From -16   to +6 - At least 2 reads - Maximum 50 reads - H omo: contain indel reads / total reads >= 0.9 - Hetero: contain indel reads / tot…

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Gachon-Indel Analysis

Criteria 1 (Indel statistics) Criteria 2(PCR-experimental data)  

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Donor pedigree

Donor pedigree Who is he?? The first Korean individual who had sequenced a whole genome is Sunjin Kim. He was born Korea 19XX.? Ethical comment The do…

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Gachon-DNA ext.

  Genomic DNA was extracted from Whole blood by QIAamp DNA blood kit(Qiagen). DNA extraction followed the manufacturer's instructions(Qiagen). Br…

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